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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI researchers Lee … Since early 2020, people all over the world have been forced to confront the awesome power that viruses have to … hydrothermal vents – and computationally identifying which sequences represent viruses that were present in the sample. …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining lab protocols at the bench to … Hour mentioned that she had gained knowledge in bioinformatics and machine learning. “Also,” she added, ”I’ve … and Identification of Mitochondrial Plasmids from DNA Sequence Moitrish Majumdar Mentors: Bikash Shrestha, Crysten …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … also holds a joint appointment with the University of California, Berkeley. Nowadays, Session is an Assistant … and the  oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is …
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Atif Shahab
… Since 2012, Mr. Shahab has led the development of an integrated platform for tracking JGI's sequencing projects and data warehousing. … BS in Electrical Engineering, University of New South Wales, Australia; MS in Computer Science, …
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JGI@25: Stories from Intern Alumni
… . Over the next few months, we’ll be revisiting a number of notable achievements that showcase our collaborations and … the past 25 years, the JGI has hosted interns from a number of universities and organizations. From field research and …
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its reproductive machinery The Science To better … in early fungi and discovered genes that are critical for this process. The Impact In the absence of the … with the fungi and bacteria, while the DOE JGI team sequenced and annotated a host genome (Rm ATCC 52813) as …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature … States. They also provided multiple access points to the information. The team harnessed a community-science program to … program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established …
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Forest Fungi, Seagrass, and a New View of Symbiosis
… Three stories of JGI-supported research, connected to nutrient cycles. … Martin and Lucas Auer discuss their work on communities of forest floor fungi. Allison Joy looks into seagrass …
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SIPs with Standards
… Stable Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can … SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible to … -- more reproducible, more reusable, and more insightful, for the future of studying microbial communities.   …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… early Earth conditions. The Science Through a combination of sequencing tools and techniques applied to samples … microbial mats at Yellowstone offer researchers an analog for studying early Earth conditions. Additionally, … thousands to millions of copies of a particular DNA sequence from just a few pieces of DNA. Summary The extreme …
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10 From JGI on the 2019 Highly Cited Researchers List
… Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has released their 2019 list of Highly … Nature Genetics, the work is part of a long-term project to sequence, annotate and analyze the genomes of more than 300 …
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Better Living Through Bioenergy
… Biofuels and bioproducts are a way to kick our addiction to … Joint BioEnergy Institute (JBEI) , a JGI partner and one of the four US Department of Energy Bioenergy Research Centers.  …
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