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JGI User Executive Committee Expands
… have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of … improving bioinformatics tools that can help with dataset analysis, as well as how they can be shared with and used by …
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2025 NeLLi Symposium
Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and the Desert Research Institute, the … metabolic and functional capabilities. Take part in the "Sequences to Cultures" Jamboree!  Immediately following the … Dartmouth University … Metagenomic and single-cell sequence data have provided a means to access novel …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… than 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, … Science Programs Deputy Axel Visel teamed with University of California (UC), Merced assistant professor Suzanne Sindi … the difficult early stages, so I can begin biological analysis of the data sooner than I anticipated.” In her …
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SPRUCE-ing Up Science
… his backyard in Tennessee — the birds are chirping and a soft breeze ripples through the trees in his backyard. Originally from northern California and one of the first students to participate in the DOE Joint Genome … the inevitable questions about the study’s methods and analysis, Lawrence is spending time on the graphics that …
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Ancient Algae Reveal Secrets of Plant Evolution
… 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , … Berkeley National Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which … plant resilience and productivity. The algal genomes sequences are available on the JGI’s  PhycoCosm portal. … …
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Viruses Reprogram Cells into Different Virocells
… from The Ohio State University and the University of Michigan studying how virus infections cause significant … metabolic changes they’ve undergone. The Impact The number of microbes in, on, and around the planet is an astronomical … was done by the JGI, and proteomics and metabolomics analysis and microscopy at EMSL. The team infected the …
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What Happens Underground Influences Global Nutrient Cycles
… for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user facilities—the  … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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I-Min (Amy) Chen
… data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol … P, Ritter SJ, Webb C et al. The IMG/M data management and analysis system v.7.0: content updates and new features. … and Chu K. Maintaining a Microbial Genome & Metagenome Data Analysis System in an Academic Setting, SSDBM 14, July 2014 …
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How Filamentous Fungi Sense Food
… . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … N. crassa is the model organism for filamentous fungi, all of which contain a wide array of plant cell-wall degrading … strains generated by Grant P01 GM-068087 “Functional Analysis of a Model Filamentous Fungus” and that are …
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JGI at the AGU Fall Meeting
Register for the meeting here. Here are some sessions of interest (all times in PST unless otherwise noted): … December 7   9:15am PT (online) Town Hall on the role of user facilities in accelerating research and tips for … “Microscopic time travelers: A finely tuned, time-resolved analysis of viral and microbial communities in the Erpe …
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DOE JGI Interns Share Their Summer Experiences
… the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many of them spent the summer crunching genomic data at a … also do some computational analyses at their desks. As part of the DOE JGI’s efforts to promote diversity and inclusion …
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Methane Makers in Yosemite’s Lakes
… the microbial communities living in the mountaintop lakes of the Sierra Nevada mountains. These lakes are isolated, …
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