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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… speakers who shared a look back at the JGI’s history, from its beginnings in the sequencing for the Human Genome … revolutions,” Ari Patrinos opened with this quote from Thomas Kuhn in his 25th Anniversary presentation. … efforts expanded beyond LANL to include resources from Lawrence Livermore and Lawrence Berkeley National Labs. …
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Mindfully Moving JGI
JGI is in the process of shifting its operations from Walnut Creek to the heart of the Berkeley Lab campus. … that the process of moving 250 people and their equipment from 4 single-story buildings to a new 4-story building 20 …
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Evolution of a Fungal Gene Expression Regulator
Impact Interactions between plants and fungi run the gamut from mutually beneficial to antagonistic. In fungi, 5mC is …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
Since one of the challenges of developing alternative fuels from plants is the high cost and resource requirements of … cultured by analyzing and then extrapolating data obtained from environmental samples — to identify over 27,000 … pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias Hess, first …
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Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.,
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When “The Blob” Made It Hotter Under the Water
Data from marine heatwave event may foreshadow climate change … in the ocean drive the biological pump that takes carbon from the atmosphere and keeps it in the deep ocean. With … P transect, a series of geographic coordinates which go from coastal to open ocean waters. Between 2010 and 2016, …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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The Expanding Universe of Methane Metabolisms in Archaea
… provided by the other study co-authors, and reconstructed from these 10 metagenome-assembled genomes (MAGs) … because the database already contains metagenome datasets from a variety of environments, as well as tools for … Of the 10 MAGs reconstructed in the study, five were from undersampled or previously undescribed lineages, and …
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Waiting to Respire
Genomes from uncultivated bacteria offers clues to ancestral … lineages Margulisbacteria and Saganbacteria that diverged from the bacterial tree before Cyanobacteria and its … Saganbacteria. At the same time, working with researchers from the Bigelow Laboratory for Ocean Sciences, Microbial …
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JGI Accepts 17 Proposals for Community Science Program
… (Berkeley Lab). They were selected through peer review from 41 full proposals out of 50 letters of intent … in the Antarctic Peninsula. Additionally, the proposal from Viola Krukenberg at Montana State University successfully evolved from a white paper approved through JGI’s CSP New …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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