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JGI at the AGU Fall Meeting
Integrating Collaborations for User Science (FICUS) program allows scientists access to multiple user facilities … User Facilities in One Proposal via FICUS December 13 8:12 am Convention Center eLightning Theater IV: Kuno Kasak, … Changes Nitrogen Cycling Microbial Communities and Reduces N2O Production Potential in Sacramento-San Joaquin Delta, …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… located at Berkeley Lab. In addition to providing metagenome mining for computational analysis of the AT enzyme … Yasuo Yoshikuni, head of the JGI’s DNA Synthesis Science program, underscored the value of taking a look at the AT … plant, fungi and animal. This analysis led them to identify 2,938 putative AT  genes. Within the AT genes identified …
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Exploring and Thinking Critically about Scientific Problems with JGI Interns
While summer interns at the JGI from multiple programs had their own goals to achieve, they constantly …
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The JGI Data Portal: Improving User Experience
… areas of focus and data and computational needs. Over its 23-year history, JGI has produced more than 13 petabytes of … Google Analytics data, the team noticed that a large percentage of Phytozome users who were seeking to download all the … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Help from Citrus’ Bitter, Hardier Cousin
… a disease ravaging citrus groves: citrus greening. From 2012 to 2016, in Florida alone this disease caused an estimated … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Green Algae Reveal One mRNA Encodes Many Proteins
… and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Expanding Virophage Diversity
… approaches. By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & … virophage marker gene MCP, they were able to identify 44,221 total virophage partial sequences, including over 28,000 … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
In   April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25.  On March 17, 2020, a … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria … the JGI has pioneered, including single-cell genomics and metagenomics. The GEBA initiative has also utilized a very … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Webinar: Introducing the BioSANS capability
Biology (CSMB) at Oak Ridge National Laboratory.   On March 2, 2021, the Environmental Molecular Sciences Laboratory hosted … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… , one of eight scientists and engineers who received the 2020 Ernest Orlando Lawrence Award , one of DOE’s highest … and Systems Biology Division, and JGI’s deputy for user programs. She also leads the JGI’s Microbial Systems group. …
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Extracting the Secrets of Secondary Metabolites
… in overcoming this obstacle when it hit the scene in 2019. Now, that power is poised to grow exponentially by … pairing proved to rapidly confirm enhanced production of 22 metabolites from six biosynthetic gene clusters. One of … into other bacteria, thereby enhancing the scientific community’s understanding of how secondary metabolites are …
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