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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … on every continent besides Europe and Antarctica. A  new analysis takes a  genomic look at Lentinula samples from … mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the family tree for Lentinula. …
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Neha Varghese
… key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data … science and projects through implementation of advanced analysis pipelines and tools as well as development and …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
…   The Science Scientists have fully decoded the genome of an oil-producing green alga, and demonstrated precise … genome assembly, researchers offer a gapless end-to-end sequence of complete chromosomes. Auxenochlorella solves a major challenge in … This work was supported by the Department of Energy (DOE) Office of Science, Biological and …
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Better Genome Editing for Bioenergy
… A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in … Cas9 needs guide RNA to lead it to the correct sequence to snip — but not all guides are effective. To … approach: CRISPR-Cas9 relies on RNA with a short guiding sequence (20 bp) that directs the endonuclease where to cut, …
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … The Impact Despite great strides in generating genome sequences for members of the microbial world through bulk … the viability of HCR-FISH+FACS for selectively enriching low abundance microbial groups from complex natural …
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with the … with light availability. A long-running time-series study offers a first glimpse into a full season’s cycle of this polar environment. This cycle suggests a reliance on … (project 4031). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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Niche dimensions of a marine bacterium are identified using invasion studies in coastal seawater
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Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance
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Niche differentiation among annually recurrent coastal Marine Group II Euryarchaeota
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Host-specific and tissue-dependent orchestration of microbiome community structure in traditional rice paddy ecosystems
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Marker-free carotenoid-enriched rice generated through targeted gene insertion using CRISPR-Cas9
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Molecular Evolutionary Consequences of Niche Restriction in Francisella tularensis, a Facultative Intracellular Pathogen
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