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Reconstructing each cell's genome within complex microbial communities—dream or reality?
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Genome size, cell size, and the evolution of enucleated erythrocytes in attenuate salamanders
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DAP-seq Drives Robust Mapping of Gene Regulation
… to technical limitations and the sheer complexity of plant genomes. Now, with improvements to DNA Affinity Purification … allow simultaneous measurement of multiple samples in a single experiment — and integrated these data with single-cell gene expression maps. Together, the scale of data …
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MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
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Genomes of Three Methylotrophs from a Single Niche Reveal the Genetic and Metabolic Divergence of the Methylophilaceae
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Patterns of genomic variation reveal a single evolutionary origin of the wild allotetraploid Mimulus sookensis
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First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex … genomic breeding in these crops. For diploid species, sequencing programs generally focus on a genotype with two … used to define a minimum tiling path of sequences in a single contiguous region. The JGI sequenced half of the …
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Webinar: PhycoCosm Tutorial
… JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Why would your Tree ever differ from NCBI Taxonomy? … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Marine Microbe Contains Multitudes
… periodically at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, the team then sequenced … metatranscriptomes), as well as the genomes of single cells of the uncultivated SAR324. The constellation … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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Abundant nitrite-oxidizing metalloenzymes in the mesopelagic zone of the tropical Pacific Ocean
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria ( … using techniques that the JGI has pioneered, including single-cell genomics and metagenomics. The GEBA initiative …
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Metabolomics
… this identification, metabolomics enables functional genome annotation, improves understanding of the role small molecules play in diverse biological … sheds light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI Metabolomics Platform …
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