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Microbiome engineering for sustainable agriculture: using synthetic biology to enhance nitrogen metabolism in plant-associated microbes
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Identification and characterization of a skin microbiome on Caenorhabditis elegans suggests environmental microbes confer cuticle protection
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes to … has identified the major metabolic roles of constituent microbes, publishing their findings in the  Proceedings of … is a division of labor by these bacterial groups. But why the strain variability? The authors think the reason may …
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JGI announces first round of 2023 New Investigator awardees
… our tools with a widening circle of researchers. That’s why twice each year we look for novel research projects — …
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Webinar: MycoCosm Tutorial
… JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … ) on PhycoCosm tree with several sequenced genomes. 2.  Q: How exactly EcoGroups are built? … or PhycoCosm. At the moment there is no DOE mandate to sequence more Amoebozoa, but we are open to a dialogue about …
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Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea
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Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative
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Picking Up Threads of Cotton Genomics
… Berkeley National Laboratory (Berkeley Lab) has now sequenced and assembled the genomes of these five cotton … insights on crop improvements at a genetic level, including why having multiple copies of their genomes (polyploidy) is … it, which exact base or series of bases you have to alter.’ Why should we invest in something that may not be an …
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Mapping the Earth’s Hidden Fungal Kingdom
… about 200,000 fungal species have been named. Among those sequenced, roughly half of all genes have completely unknown … for prediction of fungal lifestyles based on genome sequences.” The Fungal Knowledge Gap The fungal kingdom … species lies an even thornier problem: The genomes already sequenced don't adequately capture the vast nature of fungal …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… to bioremediation efforts for decades. Identifying resident microbes that can help bioremediate toxic substances has led … and 2010. DNA was extracted from the samples that were sequenced by the U.S. Department of Energy (DOE) Joint … at the NRAP site. However, the microbial strain’s genome sequence was not in IMG/M when the NRAP samples were …
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JGI-USCCN Strain Sequencing Opportunity
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The Power of One, Amplified
… between the analyzed community members. The Impact Though microbes help regulate the planet’s nutrient cycles and are … snippets of microbial genomes directly from environmental sequence data, by piecing each genome together from large mixtures of genomic sequences. A complementary approach to this is single cell …
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