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Uncovering Novel Genomes from Earth’s Microbiomes
… have uncovered genomes for just a small fraction of Earth’s microbial diversity. Because most microbes cannot be … under laboratory conditions, their genomes can’t be sequenced using traditional approaches. Identifying and … repository of 52,515 microbial draft genomes generated from environmental samples around the world, expanding the …
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Expansion of Thaumarchaeota habitat range is correlated with horizontal transfer of ATPase operons
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Examples: Successful LOIs & Submissions
… calls. These documents have been shared with permission from the PIs who drafted them.  … Microbial contributions to soil carbon storage during …
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Adaptation to Environmental Extremes Structures Functional Traits in Biological Soil Crust and Hypolithic Microbial Communities
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Comparative Biochemical and Structural Analysis of Novel Cellulose Binding Proteins (Tāpirins) from Extremely Thermophilic Caldicellulosiruptor Species.
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DAS Tool for Genome Reconstruction from Metagenomes
… and validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging … and improved upon a tool that combines existing DNA sequence binning algorithms, allowing them to reconstruct … genomes, particularly from incredibly complex soil microbial communities, is crucial to understanding how these …
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Extreme Scale De Novo Metagenome Assembly
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First Monoploid Reference Sequence of Sugarcane
… species are diploids and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple sets … and their complex genomes are more difficult to sequence and assemble, in turn limiting the use of modern, … genome, which makes sequencing and assembly of the genome extremely challenging. The reference sequence is useful for …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm microbial diversity is wilder than ever. Imagine researchers … the process hinges on referencing to existing genome sequences.  Some of these proteins are what the scientists … very hard to have 100 sequences from different locations or habitats that align very well, randomly,” Kyrpides …
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Metabolomics Technology Group
… direct biochemical datasets to improve our understanding of microbial metabolism. Of particular interest is …
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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… in a temperate forest filled with Norway spruce trees, and microbial activity teems beneath your feet. Both bacteria … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences … activity, Baldrian’s team distinguished four specific habitats within the forest floor: the leaf litter on top of …
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