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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … at Lawrence Berkeley National Laboratory (Berkeley Lab) sequenced 1 trillion bases — a terabase — of soil RNA for … reads. “Currently, this is the largest JGI-sequenced fungal metatranscriptome yet,” said Igor Grigoriev, Fungal Genomics …
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A perspective: Metatranscriptomics as a tool for the discovery of novel biocatalysts
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Visualizing metagenomic and metatranscriptomic data: A comprehensive review
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Comparison of soil biosolarization with mesophilic and thermophilic solid digestates on soil microbial quantity and diversity
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Ian Blaby
… of Florida and UCLA he has worked with a wide range of eukaryotic algae, archaea and bacteria with a view to developing a deeper understanding of sequence-based gene function. … B.Sc. (HONS) – University of … Wales, Cardiff, Genetics Ph.D. – University of Cambridge., Microbial molecular biology Post-doctoral positions  – …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … metabolites for multiple applications The planet’s microbial diversity is immense, yet much of it remains … Group. Many of these bacterial and archaeal genome sequences have been generated using techniques that the JGI …
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A Recommendation for Naming Transcription Factor Proteins in the Grasses
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… in a temperate forest filled with Norway spruce trees, and microbial activity teems beneath your feet. Both bacteria … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences … to create the database. JGI provided metagenome and metatranscriptome sequences, as well as individual reference …
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Microbial Community Field Surveys Reveal Abundant Pseudomonas Population in Sorghum Rhizosphere Composed of Many Closely Related Phylotypes
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Microbial Genomics & Metagenomics (MGM) Workshop
Registration has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on Microbial Genomics and Metagenomics. Details: … workflows for computational analysis and interpretation of sequence data. IMG/M is a web-based platform that provides …
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Taxonomic and functional restoration of tallgrass prairie soil microbial communities in comparison to remnant and agricultural soils
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Strain Engineering
The focus of this group, in recent years, has been to bring … The developed strains represent an additional phase of user-accessible project types, in which DNA-based … integrated into a taxonomically diverse suite of microbial chassis strains for elevated opportunity for …
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