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… Every year, the JGI sequences around 35,000 samples — from plants, algae, … — to support scientists around the world. Most of those researchers send their samples in from afar, without ever …

… years, provides users with the genome browsers, gene pages, search, BLAST and BioMart data warehouse interfaces they … Questions about the transition from Phytozome v12 to v13. Why is it necessary to retire Phytozome v12? The codebase … preset for the gene in question, so you can download sequences, annotations, and gene structures. These genomes’ …

… adapted and evolved throughout its history. Their research, published in  August 2023 in  Nature Plants , was … locations.  One group investigated changes in protein sequences, while others analyzed single point mutations … Facility at Lawrence Berkeley National Laboratory, provided sequence resources — including the eelgrass genome assembly …

… Haloarchaea flourish in hypersaline environments, and researchers are interested in learning how these microbes have … Impact By collecting and sequencing dominant haloarchaeal sequences from six hypersaline lakes, researchers focused on … the haloarchaea that thrive in the very salty waters of Deep Lake to better understand how they’ve adapted to these …

… link functional information with individual cells. Research Team    … access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover the genomes of uncultivated … now uses laser microdissection to selectively isolate and sequence microbial aggregates after first imaging with …

… with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each representing a … comes from finally having an answer to the question, “Why bother keeping this?” For Stuart McDaniel’s lab at the … The work wraps more than a decade of working with researchers at the U.S. Department of Energy (DOE) Joint …

… impressive environmental and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program. … first legume species with a published complete draft genome sequence. At the time, the vital global source of both … the soybean genome sequence immediately spurred further research and additional discoveries. Stacey noted that even …

… Using a novel computational approach, researchers confirm microbial diversity is wilder than ever. … living everywhere from soils and stomachs to the deep sea are capable of doing a lot of unique things when it … the process hinges on referencing to existing genome sequences.  Some of these proteins are what the scientists …

… that allows algal scientists and enthusiasts to look deep into more than 100 algal genomes, compare them, and … The name PhycoCosm stems from the Greek phykos, meaning seaweed. Seaweeds are algae, but many kinds of algae exist. … algal genomes can be incredibly complex and difficult to sequence and understand. A team of researchers led by Algal …

… complex environmental samples. The Science A team led by researchers at the Max Planck Institute (MPI) for Marine … The Impact Despite great strides in generating genome sequences for members of the microbial world through bulk … microbes within metagenome samples and associate their sequences with their roles within their environments. …

… a major transition of biology into data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. The Research Team   … The research efforts of the group have concentrated in … challenges in Biology, with a special focus on microbiome research.  These efforts include exploration of the global …

… on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More recently, these long-reads have been … Q: How many PacBio metagenomes can I submit?  How deeply are metagenomes sequenced? A:  For the next call ( …