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MicroSyn: A user friendly tool for detection of microsynteny in a gene family
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JGI@25: Using Team Science to Build Communities Around Data
Genomes (1KFG) Project through a 2012 Community Science Program proposal. Joseph Spatafora of Oregon State … of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would complement these … genomes in progress and 200 that are pending samples from users. Roughly 300 have been published. Spatafora said the …
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Synthetic Biology Informatics Group
Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software includes: gRNA-SeqRET , an organism-agnostic CRISPR gRNA design tool BOOST , which provides …
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iPHoP: A Matchmaker for Phages and their Hosts
… prediction approaches, researchers have created a new program called iPHoP (pronounced “eye-pop”,  freely … nutrient cycling, or carbon sequestration. Summary Existing programs use a variety of approaches to match a virus with a … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, …
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Digging into Microbial Ecosystems Deep Underground
… nutrients in these systems.” -Mike Wilkins, Colorado State University GI users and microbiome researchers Mike Wilkins and his … Kaela Amundson at Colorado State University have many questions about the microbial communities deep underground, …
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Axel Visel
Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his Ph.D. in 2004 …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … sediments,” said Woyke, who also heads the JGI’s Microbial Program and is one of the article’s senior authors. The team … some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science …
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Virus-Microbe Interactions of Mud Island Mangroves
… the DOE Office of Science Graduate Student Research (SCGSR) program , which awards graduate students the opportunity to … at one of the DOE national laboratories or national user facilities. Baker had worked with the JGI through a Community Science Program (CSP) proposal, and Rambo’s research builds on that. “The …
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A Natural Mechanism Can Turbocharge Viral Evolution
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at Lawrence Berkeley National … support the idea. Study coauthor Stephen Nayfach, a JGI bioinformatics research scientist, found that pieces of viruses … (MCB-1553721), the Camille Dreyfus Teacher-Scholar Awards Program, and the California NanoSystems Institute (CNSI) …
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Better Genome Editing for Bioenergy
Joint Genome Institute (JGI), a DOE Office of Science User Facility. Y. lipolytica is a tantalizing microbial … is actually essential. Through the JGI’s  Community Science Program , the scientists thus set out to identify which … work was supported by DOE Joint Genome Institute grant  CSP-503076 (IW, HA, and MB) and NSF  1706545 (IW). HA and JW …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory through the Community Science Program . The comparative framework provided by these high … in  Marchantia  and in flowering plant lineages.   With the information about  Marchantia -specific innovations and …
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JGI Announces 2025 New Investigator Portfolio
Ian Gilman, Louis Graf, Yuxi Guo, Shaomei He, Vayu Hill- Maini, Forrest Lefler, Pok Man (Bob) Leung and Huang Li; … The New Investigator call , part of our  Community Science Program , allows us to work and share our tools with a … in the November 2025 review. You can also find more information about the JGI’s  various proposal calls here. …
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