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Tanja Woyke
… she deciphered function and host-symbiont interplay using metagenomics. Taking on a Research Scientist position in 2007, she switched gears from metagenomics to single-cell genomics, which is now her primary … and a metagenome- assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology 35, 725-731. Mukherjee et al. …
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Distinct Microbial Assemblage Structure and Archaeal Diversity in Sediments of Arctic Thermokarst Lakes Differing in Methane Sources
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Supercharging SIP in the Fungal Hyphosphere
… a wide variety of microbes, including both bacteria and archaea, actively engaging with the fungi — highlighting the …
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Nikos Kyrpides
… comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined … al. 2019. Cryptic inoviruses are pervasive in bacteria and archaea across Earth’s biomes. Nature 4:1895-1906 Sberro H. …
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Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry
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Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains
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In depth metagenomic analysis in contrasting oil wells reveals syntrophic bacterial and archaeal associations for oil biodegradation in petroleum reservoirs
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Applying Viral Genomics Expertise to Understanding the Human Virome
CheckV , which assesses the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , … learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria ( PLoS Biol , 2023). These tools have …
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JGI Scientists Pen Genome Watch Articles
… “Given the great expertise in microbial genomics and metagenomics of the microbiology-focused groups at the Joint … characterizing the human microbiome  by its genomes and metagenome , rather than just by 16S ribosomal RNA gene … Program lead, shone a spotlight on  ammonia oxidizing archaea and what we’re learning about their metabolism . And …
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Natural Prodcast Episode 14: Nigel Mouncey
… in an obvious way. NIGEL MOUNCEY: We did a little bit of metagenome screening work and did find related clusters. But … in the environment and how we might be able to take advantage of those to improve plant health, for example.  DAN: … is going to be fully virtual because we’re not at the stage yet where I think everybody feels comfortable in …
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Genome Sequence of Arenibacter algicola Strain TG409, a Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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