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Making a Lichen Together
… and alga to understand their partnership more clearly. The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) … Institute of Genomic Sciences and Policy (for DNA sequencing and assembly); by a three-year subcontract to DA, FL, …
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Examples: Successful LOIs & Submissions
… examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful … CSP Functional Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared with … Linking lignin engineering to drought stress resilience: RNA-seq …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an … and comprehensive database of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into … Research (BER) program to enable scientific discovery in support of the DOE mission. Fermentative metabolism occurs in …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common images in … known to be partially due to the DNA sequence that makes up an individual’s genome. The genes of sorghum plants are … of California, Berkeley [N.V.]); L’Ecole Normale Superieure-CFM Data Science Chair (E.P.); and the Office of …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Rex Malmstrom, leader of the Microscale Applications group at the JGI, whose team uses a semi-automated, …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of … Summary Filamentous fungi are like handymen who show up at a job site for a task that requires a flathead … at the Fungal Genetics Stock Center. This work was supported by an Energy Biosciences Institute Grant, a …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome … Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision The … most advanced integrative genome science capabilities in support of the DOE’s research mission.     Director's …
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Mapping Heat Resistance in Yeasts
… A new approach for improving functional annotation in fungal genomes. The Science In a proof-of-concept study, researchers … associations between genotype – an organism’s genetic makeup – and phenotype – an organism’s physical characteristics, … Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the US Department of …
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Partners
… The JGI leverages its existing partnerships and develops others providing complementary expertise to advance the science and serve as impact multipliers . The JGI has a … Arizona Genomics Institute for DNA and RNA extractions to support plant and other efforts. The JGI works closely with …
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FICUS-NERSC/KBASE
… to serve the scientific community as a user facility pioneering functional genomics to solve the most relevant bioenergy … is to accelerate scientific discovery at the DOE Office of Science through high performance computing (HPC) and data … tools to help predict biological function.   To jointly support these missions, and to expand upon highly successful …
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CSP Large Scale Call
… The Community Science Program Large Scale call is focused on genomic … projects that address biological functions for biomanufacturing, critical minerals and materials, inter-organismal interactions, and predictive biology, modeling and biodesign — questions of relevance to DOE’s …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or harm plant host health. The Science Researchers compared the genomes of fungi that … by graduate student Fantin Mesny in Stéphane Hacquard’s group at the Max Planck Institute for Plant Breeding Research …
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