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Chloroflexi CL500-11 Populations That Predominate Deep-Lake Hypolimnion Bacterioplankton Rely on Nitrogen-Rich Dissolved Organic Matter Metabolism and C1 Compound Oxidation
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Hiroshi Otani
… Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, particularly actinomycetes. … new technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the … is particularly interested in understanding how, when and why microbes decide to produce which metabolites. …
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JGI Portals
… stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data … and tools in support of DOE mission priorities. Data discoverability and accessibility are critical requirements for … access to information regarding genome and metagenome sequencing projects, and their associated metadata, around …
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Overview of the Genomes OnLine Database (GOLD)
… gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …
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Micro-Scale Applications Group
… group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our … cell sorting, DNA amplification, and sequence analysis to recover the genomes of uncultivated microbes. We also apply … that allow us to select specific uncultivated microbes for sequencing based on their level of metabolic activity …
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Accelerating Metagenomics Discoveries with Deep Learning
… learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered from whole samples rather than … is passed through algorithms organized into multiple interconnected layers. The architecture of these algorithms, … Deep learning algorithms can vectorize faces… … so, why not proteins?         …
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Synthesis
… Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is done … dedicated to user project design, assembly, and quality control Strain Engineering Group : a research & development … genomic data by designing and assembling physical DNA constructs that can then be functionally characterized.    …
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Jeremy Schmutz
… now the HudsonAlpha Institute for Biotechnology. There he constructed the pipelines for directed finishing and co-led … of the Human Genome Project in 2003, he developed sequencing, assembly, and improvement strategies for de novo sequencing of eukaryotic organisms from simple yeasts to …
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JGI announces second round of 2023 New Investigator awardees
… left to right: [above] Emma Bell, Mallory Choudoir, Sneha Couvillion, Tobin Hammer, Christina Hazard, Rachel … Benjamin Peterson, Dacheng Ren, Allison Rober, Neal Scott, Chikae Tatsumi, Vojtech Tlaskal, Fernando Torralbo, … our tools with a widening circle of researchers. That’s why twice each year we look for novel research projects — …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come … insights on crop improvements at a genetic level, including why having multiple copies of their genomes (polyploidy) is … their genomes were “remarkably” stable. “We thought we were sequencing the same genome multiple times,” Schmutz …
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JGIota: The Algae Nicknamed ‘Chlamy’
… UC Berkeley plant biologist Sabeeha Merchant explains why she works on this alga, how researchers managed to …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… a number of notable achievements that showcase our collaborations and capabilities to enable great science that … different areas, beyond the project’s initial scope. Sequencing and culturing this vast collection of rumen … rumen microbes are awesome and this is just another example why.” …
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