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2024 Progress Report
The Integrative Genomics Building (IGB) seen above is home to the DOE … Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area … processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the … by combining a study of microbial communities (metagenomics) and a chemical labelling approach. The Impact … identified. The JGI researchers surveyed publicly available data in the JGI’s  IMG/M database , information the Probst …
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Cultivation and visualization of a methanogen of the phylum Thermoproteota
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and … researchers searching for sequences of RNA viruses in large data sets, their work may be akin to finding a single … a colored-in page of that book. Published online September 28, 2022, in Cell , a team led by researchers at Tel Aviv …
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Genome-Scale Data Call for a Taxonomic Rearrangement of Geodermatophilaceae
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A synthesis of bacterial and archaeal phenotypic trait data
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Toward a Data Infrastructure for the Plant Cell Atlas.
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AmiGO: online access to ontology and annotation data
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Plant Program
With collaborative user projects, the JGI’s Plant Program delves into … understanding of plant diversity and integrating various data types to explore the molecular mechanisms behind … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
As SIP experiments shed more light on microbial communities … — JGI researchers and collaborators work to create FAIR datasets to maximize returns on these advances. Over the … this was the first workshop of its kind on SIP metagenomics,” Malmstrom said.  Increasingly, efforts like …
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Frederik Schulz
… sequence data. Dr. Schulz employs multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) … academic achievements (2008) … Education … Selected Publications … Awards and Service …
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