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iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology
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ActinoBase: tools and protocols for researchers working on Streptomyces and other filamentous actinobacteria
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Nikos Kyrpides
… lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson Reuters …
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DOE Metrics
…     2,167     *Includes Illumina and PacBio sequencing platforms. **Operating Hours target is based on 98% of the total … hours. Other DOE Quarterly Metrics Q1 – Report on new computational developments for improving microbial, … or metagenomic datasets. [Download PDF] Q3 – Report on new computational approaches for the annotation of genomic data. …
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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications.       Despite advances in sequencing technologies and computational methods in the past decade, researchers have …
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FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads
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JGI@25: Using Team Science to Build Communities Around Data
… a 2012 Community Science Program proposal. Joseph Spatafora of Oregon State University led the effort to sequence … of Georgia, along with 100 of his colleagues in the comparative plant genomics community. The project’s aim is … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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Exabiome: Advancing Microbial Science through Exascale Computing
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The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities
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Development of genetic tools for heterologous protein expression in a pentose‐utilizing environmental isolate of Pseudomonas putida
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gRNA-SeqRET: a universal tool for targeted and genome-scale gRNA design and sequence extraction for prokaryotes and eukaryotes
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EnZymClass: Substrate specificity prediction tool of plant acyl-ACP thioesterases based on ensemble learning
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