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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and … characterized at UC Berkeley and the Innovative Genomics Institute.  The Science Researchers report the … by searching for Cas12d homologs across IMG/M’s assembled metagenomic data. It turned out that some of these were …
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Biodesign
…   The Joint Genome Institute's Biodesign Platform capabilities support researchers exploring how to convert … enables users to validate hypotheses generated from mining genomic data by designing and assembling physical DNA … Check out our organism-agnostic CRISPR gRNA design tool  …
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Microbial secondary metabolites: advancements to accelerate discovery towards application
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… Congratulations to the 2023 Highly Cited Researchers from the JGI … influence in their chosen field or fields through the publication of multiple highly cited papers during the last … as a Nature Microbiology study that leveraged population genomics to investigate archaeal hitchhikers and found that, …
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The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery … changes. Summary Researchers have been utilizing metagenomics as a way to study a collection of … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the …
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Novel Approaches Toward Scalable Composable Workflows in Hyper-Heterogeneous Computing Environments
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and … in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Breaking the reproducibility barrier with standardized protocols for plant–microbiome research
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In the … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to … Len Pennacchio is the JGI's Deputy of Genomic Technologies. oClick to learn more about the … The Deputy of Genomic Technologies serves as the JGI’s primary point of contact for all …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and … on an online interactive browser – contains the phenotypic records of 8,350 organisms along with 4,355 genomes and 13.6 … This work was supported by the United States Department of Agriculture …
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