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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
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Help from Citrus’ Bitter, Hardier Cousin
… that could prove fruitful for saving Citrus from greening disease. You’ve probably never heard of … resists a disease ravaging citrus groves: citrus greening. From 2012 to 2016, in Florida alone this disease caused an …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free environments? … senior authors. “But this has been done most commonly in bacterial-based systems, and so one of the things that I … metabolic pathways that we plan to offer to users in the near term,” added JGI Director  Nigel Mouncey . Hal Alper …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… host metabolism, such as genes that play roles in the uptake and transport of diverse substrates, and also … and giant viruses to any known virus lineage. “Getting complete, near complete, or partial giant virus genomes reconstructed …
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A Natural Mechanism Can Turbocharge Viral Evolution
… ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating … by the JGI, to uncover these DGRs. DGRs were found in single microbial and viral genomes, as well as genomes sampled all at once from the same environment, called metagenomes. Why? Simon …
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Understanding Wildfire Recovery, Starting in Soil
… to health, researchers have taken a look at microbial genomes across a spectrum of burned soils. By connecting … — that many microbes in burned soils had in common.  To complete this analysis, a multi-institutional team of researchers collected soil samples from a wildfire that burned at the Colorado-Wyoming border, …
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Gene Expression: From On-Off Switch to Dial
… the production of betaxanthins. They used combinations of single guide RNA, or a single RNA piece that recognizes a particular area in the DNA, to determine which targets might benefit from an intermediate level of expression. Similar to the … under FP00005685. In addition, M.D. acknowledges funding from a National Defense Science and Engineering Graduate …
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Generation of Transcript Assemblies and Identification of Single Nucleotide Polymorphisms from Seven Lowland and Upland Cultivars of Switchgrass
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Cataloging the Microbes that Manage the Health of River Systems
… Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds in the … Metatranscriptomic information was also generated. The 3.8 trillion bases or Terabases of sequencing data, along … This work was partially supported by awards from US Department of Energy (DOE) Office of Science, Office …
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Seven genome sequences of airborne, bacterial isolates from Antarctica.
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A Single Genomic Region Controls Primocane Fruiting in Tetraploid Blackberry
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Cultivating Symbiotic Antarctic Microbes
… consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … sequenced and assembled by the JGI. From these assemblies, complete or near-complete population genomes were recovered—termed … and the Australian Antarctic Science program (project 4031). The work conducted by the US Department of Energy Joint …
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