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Expression and regulatory asymmetry of retained Arabidopsis thaliana transcription factor genes derived from whole genome duplication
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Picking Up Threads of Cotton Genomics
… , both faculty investigators at the HudsonAlpha Institute for Biotechnology. “The goal has been for all this new … original cotton project was to try to bring in molecular methods of breeding into cotton,” said Schmutz, who heads … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
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Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP).
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Nikos Kyrpides
Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became … on Microbiome Data Science. His group is developing novel methods for enabling large-scale comparative analysis, as … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson Reuters …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth … advanced the field by providing robust methodologies for analyzing and understanding viral genomes and their … In a  2019 paper , the team applied computational methods and analyses developed for JGI-enabled research …
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Bipartite graphs in systems biology and medicine: a survey of methods and applications
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A Taxonomy of Bacterial Microcompartment Loci Constructed by a Novel Scoring Method
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Validation of two ribosomal RNA removal methods for microbial metatranscriptomics
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A New Method to Correct for Habitat Filtering in Microbial Correlation Networks
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Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications … collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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