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Expanding Virophage Diversity
… through computational approaches. By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the … Lead author David Paez-Espino  discussed an early version of the paper at the 2018 Viral EcoGenomics & …
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Game On: High School Students Drive Everglades Metagenomics Study
… made coring devices, then planned and collected from 4 sites with 5 replicates. They extracted the DNA from the … for the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) portal for their sample analysis.  The class had to … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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User Programs
… accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user … Foundry.  Submission Deadline Feb 19, 2026 (Proposals due 4/30/26) April 9, 2026  11:59pm PT  Sep 8, 2026 Jan 29, 2027 …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … in the field, you can probably skip straight on to Episodes 4 5 and 6, for some fun interviews, unless you want to fact … right. So I did a PhD in microbiology at MIT, and I studied microbial ecology. I studied Vibrio species in the ocean, so …
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … portals and tools created by JGI researchers, including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for microbial and metagenome datasets, …
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … DAN: Welcome back to Natural Prodcast! This is episode 4! From here on out, for a while, we’re going to be …   DAN: Got it.    NANCY: And this is really to complete the genomes, and I’m really thankful for this. It sort of goes …
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JGI Advisory Committees Code of Conduct
… Guiding Principles All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to … our continuing contributions to advancing the research ecosystem. Their trust hinges on sustaining our record of …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … sojae, which imperils soybean harvests. The subsequent comparative analysis of these two pathogens, led by the JGI … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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MicrobesOnline: an integrated portal for comparative and functional genomics
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Synthetic Biology Open Language (SBOL) Version 2.2.0
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Synthetic Biology Open Language (SBOL) Version 2.3
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Synthetic biology open language (SBOL) version 3.0.0
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