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Cell by cell: population genetics in the wild
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of … which imperils soybean harvests. The subsequent comparative analysis of these two pathogens, led by the JGI and Virginia … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… di-GMP (Guanine Monophosphate) is found in nearly all types of bacteria and interacts with cell signaling networks that control many basic cellular … at the University of California, Berkeley and the Joint Genome Institute, a DOE Office of Science User Facility, …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of biosynthetic gene … collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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Identification of candidate genes in Arabidopsis and Populus cell wall biosynthesis using text-mining, co-expression network analysis and comparative genomics
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been published. Analysis of the genome sequence also provides insights into …
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Game On: High School Students Drive Everglades Metagenomics Study
… email request reached  Emiley Eloe-Fadrosh , the Metagenome Program Head at the  U.S. Department of Energy (DOE) … DNeasy PowerSoil Kits and sent the samples to the JGI for sequencing.  While JGI processed, sequenced, and analyzed … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Aerobic bacteria and archaea tend to have larger and more versatile genomes
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Jeremy Schmutz
… back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha Institute for … of the Human Genome Project in 2003, he developed sequencing, assembly, and improvement strategies for de novo … de novo plant assembly and the post-genome computational analysis at HudsonAlpha. …
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Optofluidic Raman-activated cell sorting for targeted genome retrieval or cultivation of microbial cells with specific functions
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest time, … their genomes were “remarkably” stable. “We thought we were sequencing the same genome multiple times,” Schmutz … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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