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Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence
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Enlarging Windows into Understanding Gene Functions
… four letters represents an organism’s genetic code, or genome, which underlies physical features and functions. … the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We … TFs and regulatory networks are conserved across fungi.” Using multiDAP-seq, Nagy’s team is comparing five fungal …
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Improving the Cacao Genome and Phytozome
… plant is under threat due to climate change and devastating fungal infections. That’s why Mars, Inc., a maker of … will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao … . One of the goals in updating the genome annotation was developing a high quality node for cacao used …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science … code for CRISPR systems, which help bacteria resist foreign genetic elements by incorporating short sequences from … populations respond to virus infections, researchers are using Altiarchaea as a model system to study virus-host …
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A single-cell genomics pipeline for environmental microbial eukaryotes
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Improved Assemblies Using a Source-Agnostic Pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of Contigs
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CSP Large Scale Call
… inter-organismal interactions, and predictive biology, modeling and biodesign — questions of relevance to DOE’s … LOI is approved. The letter of intent must be submitted using our web-based form . Submitters whose LOIs/proposals are approved … and track record of the applicant.  Learn about the general review process or get details on the internal …
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying … Pennacchio received his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the … epilepsy and subsequently generated one of the first mouse models for this common neurological disorder. In 1999, he …
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MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes.
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Workforce Development & Education Outreach
… Modeled on the JGI-UC Merced internship program, a similar …
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Modulation of Plant and Fungal Gene Expression Upon Cd Exposure and Symbiosis in Ericoid Mycorrhizal Vaccinium myrtillus
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John Vogel
… he established an efficient switchgrass transformation pipeline and, in collaboration with industrial partners, generated hundreds of transgenic switchgrass lines in an … techniques) and utilizing these resources to understand genome organization and regulation, abiotic stress …
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