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MicroSyn: A user friendly tool for detection of microsynteny in a gene family
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Learning to Look
… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be spotted with a striped scarf, striped hat, round-rimmed glasses, or … search tool combed through more than 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last decade” by … were all instrumental in the development of the Novel Metagenome Protein Families (NMPF) Catalog . Published in …
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Doubling Down on Known Protein Families
… wilder than ever. Imagine researchers exploring a dark room with a flashlight, only able to clearly identify what falls … online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … (IMG/M) database, they successfully crafted the Novel Metagenome Protein Families (NMPF) Catalog.  “We can now …
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Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade
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Exploring Phages at JGI
… college student, I never really entertained the possibility of working at a national laboratory. However, through the … JGI-UC Merced internship program, I was able to collaborate with extraordinary scientists and gained exposure to new and different opportunities that …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… … DAN: All right. Welcome back to Natural Prodcast. I did it. … schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … really happy today to be handing over our interview with Dr Elizabeth (or Betsy) Parkinson from Purdue …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a … culture. Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along with highlighting the viruses in a given sample, …
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MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
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Functional Metagenomics of Spacecraft Assembly Cleanrooms: Presence of Virulence Factors Associated with Human Pathogens
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iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology
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ActinoBase: tools and protocols for researchers working on Streptomyces and other filamentous actinobacteria
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