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Comparison of short-read and long-read metagenome assemblies in a natural soil community highlights systematic bias in recovery of high-diversity populations
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Jeremy Schmutz
… back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha Institute for … human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed … He provides scientific project management for the reference eukaryotic genomes produced by the DOE Joint …
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ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The … an integral role in soil carbon storage. Summary There are three types of fungal saprotrophs in the forest. White rot … so many fungal  genomes , the team conducted a large-scale comparison, charting several changes caused by the lifestyle …
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SoyDB: a knowledge database of soybean transcription factors
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden understanding of the … more abundant in the drier parts of Australia with lower quality soils and even in the desert areas with poor … receive a lot of rain.  Previous analysis of the E. grandis reference genome, an international effort by a team that …
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Genomic analysis of three Bifidobacterium species isolated from the calf gastrointestinal tract
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Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils▿ †
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Genome resources for three modern cotton lines guide future breeding efforts
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a … expertise. These collaborations have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data … Looking for BBTools? Find it here.  …
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Trends in Prokaryotic Evolution Revealed by Comparison of Closely Related Bacterial and Archaeal Genomes ▿
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Comparison of 26 Sphingomonad Genomes Reveals Diverse Environmental Adaptations and Biodegradative Capabilities
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