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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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Patterns and ecological drivers of viral communities in acid mine drainage sediments across Southern China
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Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage
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Bioinformatic analysis of the distribution of inorganic carbon transporters and prospective targets for bioengineering to increase Ci uptake by cyanobacteria
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, … developed for this purpose by the JGI plant comparative genomics data portal  Phytozome and will be available for … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root …
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2024 Progress Report
… for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide … We synthesized 9.7 Megabases of DNA We processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to …
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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications.   … and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the …
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … in the lichen lifestyle. The team’s results appear in  BMC Genomics . To explore the genomes, Armaleo and colleagues … data portal … Alga Genome on PhycoCosm data portal … Datasets … Datasets …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have revisited a … energy and environmental challenges.   Scanning the California oak woodlands from the air, large swaths of the … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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User Executive Committee Charter
… (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and practices … users and their science including technical capabilities offered, proposal review procedures, and the annual user … recommendations to the JGI regarding technical capabilities offered, including areas where more or less capacity is …
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