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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The … compounds shared by most living creatures for energy, growth and reproduction—most organisms produce a … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …
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Metagenomics
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is … Genome Project (HGP), and building upon the principles for open access in the field of genomics established in  … are requested to be held until a specified date, or the publication date, whichever comes first. For nearly 40 …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… From August 21-23, 2023, attendees joined the JGI Annual Genomics … is wild,” and admitting, “friends give me a hard time for that.” But the title brought him back to his first … Annual Meeting, Holmes discussed how to use genomics and metagenomics to better understand what is called the “virus …
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Deconvolute individual genomes from metagenome sequences through short read clustering
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Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis
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Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … the ability to break down hardy plant cell walls and therefore hold clues to how humans could do the same on an … a paper in the journal Science. It detailed how they’d used metagenomics — a then-novel approach which allows scientists …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and … relevant to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US … The U.S. Department of Energy Joint Genome Institute, a DOE Office of … address some of the most pressing challenges of our time. For more information, please visit  …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… For the first time, a team has comprehensively described … painting a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, … sequence both a cell’s genome and detect accompanying viral sequences, which would suggest the virus had been infecting …
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Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill
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Learning to Look
… Machine learning approach significantly expands inovirus … answer the question, “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters … use to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” …
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