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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature … might be added to the water along the way, impacting its quality and in turn affecting environmental and human … Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist … (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of the … practices, development of standards and processes for data quality and sharing, and data workflows and management best …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Biotechnology! Loretta Spencer served as a manyterm mayor of Huntsville, Alabama and is known for her contributions to … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 Nature paper announcing a high-quality reference sequence of the complex switchgrass genome …
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Persistent memory as an effective alternative to random access memory in metagenome assembly
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Propagation of viral genomes by replicating ammonia-oxidising archaea during soil nitrification
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Viral community analysis in a marine oxygen minimum zone indicates increased potential for viral manipulation of microbial physiological state
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Natural Prodcast Episode 1: The Primer, Part 1
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there, and welcome to the first episode of Natural Prodcast. First, maybe, a little bit of …
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De novo Nanopore read quality improvement using deep learning
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The … Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are … Huber and Sebastien Ferreira-Cerca, and sequencing of MSI metagenomes within the Census of Deep Life Sequencing call …
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Investigation of recombination-intense viral groups and their genes in the Earth’s virome
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Coastal bacteria and protists assimilate viral carbon and nitrogen
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Diversity of active viral infections within the Sphagnum microbiome
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