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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… race was being waged. In this JGI@25 video, Susan Lucas, former JGI Production Department Head and current ESnet … with the HudsonAlpha Institute for Biotechnology. Publications Grimwood, J., Gordon, L., Olsen, A. et al. The … J., Terry, A. et al. The DNA sequence and comparative analysis of human chromosome 5. Nature. 431, 268–274 (2004). …
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Axel Visel
Institute in Hanover, Germany, where he developed novel tools for large-scale in situ gene expression analysis in multicellular organisms. During his postdoctoral … Computational Biology , Nucleic Acids Research . Over 80 publications in peer-reviewed journals including Nature, …
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A Complex Confection Decoded: Sugarcane Reference Genome
… world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the sugarcane cultivar R570 has been  published in  Nature by an international consortium. With the genetic code … Development (CIRAD), and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Emiley Eloe-Fadrosh
… microbes and viruses. Prior to joining the JGI, she was a Bioinformatics Program Fellow at the Gordon and Betty Moore … … Vyshenska D, et al. 2023. A standardized quantitative analysis strategy for stable isotope probing metagenomics. … Futures … Metagenome Science Program … Education … Selected Publications … Awards and Service …
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NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
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The Switchgrass Genome: Tools and Strategies
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… and mentors Igor Grigoriev and Bishoy Kamel, A Comparative Analysis of Metabolic Pathways in Fungal Pathogens Shayna … Carlos Vazquez and mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein …
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A Community Resource for Secondary Metabolite Researchers
… more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … come pre-annotated using multiple commonly used sequence analysis tools is a means of expediting BGC and biosynthesis …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or … how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but … generated by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
Congratulations to Susannah Tringe , one of eight scientists and … received the 2020 Ernest Orlando Lawrence Award , one of DOE’s highest honors! Tringe, a microbiologist, was recognized for “advances in sequence-based studies of microbial …
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global … , both faculty investigators at the HudsonAlpha Institute for Biotechnology. “The goal has been for all this new … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … viral diversity. “Although the technical challenges of data analysis at this scale are formidable.” Computational Sieves … Advances in sequencing technologies and computational tools have uncovered a diversity of viruses that infect not …
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