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Corymbia Genome Expands Terpene Synthesis Knowledge
… Australia but is increasingly farmed in other countries for essential oil production. The recent assembly of two … revealed the largest number of TPS genes of any currently sequenced plant, a number closely followed by E. globulus . … from a biofuels production perspective. By using genomic database alignment tools, researchers searched for TPS genes …
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Tissue Cultivation, Preparation, and Extraction of High Molecular Weight DNA for Single-Molecule Genome Sequencing of Plant-Associated Fungi
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Identifying genomic data use with the Data Citation Explorer
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Genome‐wide associations with flowering time in switchgrass using exome‐capture sequencing data
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Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
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Fast and accurate identification of plasmids and viruses in sequencing data using geNomad
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US … States. They also provided multiple access points to the information. The team harnessed a community-science program to … program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established …
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Kjiersten Fagnan
… Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale … focused on stable and accurate computational methods for reacting subsurface flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC …
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IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome … Input & sequencing Q(uestion): How much DNA is needed for “regular” vs the ultra-low input library creation … sequenced without pooling, which yields ~ 180 Gb of data per library. Q: How much DNA/coverage is required for …
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Pinning Down a Piece of Photosynthesis
… and cyanobacteria create the air we breathe and the fuel for food webs as they turn carbon dioxide and water into … of that machine — photosynthesizers’ DNA and RNA. These sequences provide a list of machine parts, and an idea of … or DRI for short.  A kaleidoscope of structure-function data To study DRI experimentally, Blaby-Haas, Grosjean and …
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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
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