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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates microbial genome … language of biology — and primed for integration with artificial intelligence tools.  LLMs aren’t just for … tokenization strategy. Imagine you’re at an arcade and need to convert your money into tokens to play the various …
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JGI Scientists Pen Genome Watch Articles
… Reviews Microbiology column last year — and there’s more to come in 2020. Researchers at the U.S. Department of … Seshadri. Writing the  Nature   Reviews column all started with an email in 2018.  Tanja Woyke , who leads the  … from the authors’ interests, says Woyke. Their themes just need to relate to (meta)genomics, and at least one of the …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… and Ben Bowen of the  JGI Metabolomics Program , along with Jenny Mortimer, Director of Plant Systems Biology at the Joint BioEnergy … Genomics proposal calls, projects can request up to 50 polar and 150 nonpolar metabolomics analyses. For the other … User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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JGI@25: Strengthening Soybean
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … to energy independence in the U.S. Not only does it pair with maize, the dominant source of bioethanol, in crop … ( Glycine max ) also has the advantage of reducing the need for nitrogen fertilizer. These impressive environmental …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… wild populations for the first time. For years, Elizabeth (Toby) Kellogg and other researchers at the Danforth Plant … of the continental United States, occasionally pulling over to the side of the road to collect small weedy plants and … was green millet (Setaria viridis), a small model grass with a short lifecycle that uses a carbon fixation process …
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Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding
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Offerings & Capabilities
… Technologies department is   ensuring users have access to cutting-edge capabilities to help advance their science by generating data in three … at scales amenable to statistical analysis. To meet these needs, the JGI deploys state-of-the-art sequencers and …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address climate change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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Boosting Small Molecule Production in Super “Soup”
… engineered for the biochemical conversion of glucose to value-added products are limited in chemical output due … strains. (Blake Rasor) Think of cells as tiny factories: within their walls they have both the machinery to make … complexity. Rasor cautioned that further optimization is needed to scale up for commercial viability. “For context, …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and … for User Science calls. These documents have been shared with permission from the PIs who drafted them.  …
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Fungus Fuels Tree Growth
… symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella elongata … root cells. The fungus is almost always found among and within poplar trees, and in an effort to understand its influence on the plant, a team of …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… , employ the evolutionary strategy we are far more familiar with: differentiating into male and female sexes. For the first time, the sex … (Poplar is a Flagship Plant.) To engineer them, researchers need to select and breed cultivars for the next generation. …
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