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Ancient Algae Reveal Secrets of Plant Evolution
… the US National Science Foundation (NSF) CAREER award (DBI-1652164, 1933521), the Nebraska Tobacco Settlement … Foundation grant 440231723 (VR 132/4-1) to J.d.V., TH417/12-1 to G.T. and F.R., and 440540015 (BU 2301/6-1) to H.B. … to Land: Plant Evolution to Change’ (SPP 2237), and grant 410739858 in the frame of the project CharMod to K.v.S., as …
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Nigel Mouncey
… Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its 27-year history. He has a … for Industrial Microbiology and Biotechnology (2021) 2016 World Bio Markets Bio-based Business Person of the Year … Application US8741603 Fermentative vitamin C production. (2012) U.S. Patent Application US8318462 Fermentation process. …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… to boost understanding of environmental viruses. In 2016, Nikos Kyrpides at the JGI led a team that combed datasets from around the world, finding over 125,000 partial and complete viral genomes. That study …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… giant. The genomes of giant viruses are on the order of 100 times the size of what has typically been associated … As a result, the giant virus protein space grew from 123,000 to over 900,000 proteins, and virus diversity in …
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JGI at the AGU Fall Meeting
… User Facilities in One Proposal via FICUS December 13 8:12 am Convention Center eLightning Theater IV: Kuno Kasak, … 4pm CST Convention Center, Poster Hall D-F poster B25J-1604: Eoin Brodie, Berkeley Lab: “Uncovering microbial … Hall D-F poster B45O-1813  : Maggie Bowman, PNNL: “EMSL’s 1000 Soils Project: core collection strategy and data types …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… for PacBio? A(nswer):  Regular PacBio typically requires ~ 1.5-10 ㎍. Low-input protocols are continuously improved, but … Does JGI offer long-read metatranscriptome? (for e.g. full 16S, RNA virus, etc) A:  Long-read metatranscriptome / RNA …
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Graduate Students Get Thesis Research Opportunity at the JGI
… were selected to carry out part of their thesis research at 12 host national laboratories or facilities between 3-12 consecutive months. Their proposed research projects …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… version of a specific chemical, where ordinary Carbon-12 atoms are swapped for the heavier, non-radioactive isotope Carbon-13, researchers can then safely follow the path of that …
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Effects of Polar Light Cycle on Microbial Food Web
… cycles. Water samples from Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A … population spiked to 83%, only to dramatically fall to 1% in early spring and rebound by the late spring. … the US Department of Energy under contract no. DE-AC02-05CH11231. Computational analyses at UNSW Sydney were performed …
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Matt Blow
… Symbiosis with  Medicago spp. Msystems 7 (1), e01092-21 3. Baumgart et al. 2021. Persistence and plasticity in bacterial gene regulation. Nature methods 18 (12), 1499-1505 Shulse et al. 2019. Engineered Root Bacteria … genes of unknown function. Nature 557:503-509. Blow et al 2016. The Epigenomic Landscape of Prokaryotes. PLoS Genet …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… energy metabolism. The Science Researchers produced nearly 10,000 new annotations of fungal mitochondrial genomes — the … size and structure varied enormously, ranging from just 12 kilobases in Rozella allomycis , an early-diverging … of Energy operated under Contract No. DE-AC02-05CH11231. …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… to more sustainable energy production.  However, less than 10% of the microbes found in any environment can be grown in … laboratory — and rumen microbes are no exception. Back in 2011, JGI-supported researchers published a paper in the …
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