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Yasuo Yoshikuni
… Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission of … of non-model yeasts for production of biofuels and renewable chemicals, developing genome engineering tools for non-model organisms, modulating microbe-microbe …
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Science Programs
… approaches for and with users, and create computational tools and resources for them. Their concerted efforts help …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome … Genome Institute has continued its journey to realize our new vision to, “ Lead genomic innovation for a sustainable bioeconomy ” — as articulated in our new Strategic Plan , which was released in April 2024 — …
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iPHoP: A Matchmaker for Phages and their Hosts
… prediction approaches, researchers have created a new program called iPHoP (pronounced “eye-pop”,  freely … engineer microbial communities. One day, these phages could boost plant-microbe interactions, nutrient cycling, or … Facility at Lawrence Berkeley National Laboratory, aimed to streamline a process they often took on: generating …
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JGI@25: Using Team Science to Build Communities Around Data
… Spatafora of Oregon State University led the effort to sequence 1000 fungal genomes to create two reference genomes … by more than 100 participants. Roughly 700 have been sequenced and annotated, representing 384 fungal families … Open Green Genomes project. “We currently have 19 genomes sequenced, 15 that are in sequencing or assembly right now, …
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Bioboxes: standardised containers for interchangeable bioinformatics software
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and … genome for M. sinensis, and the associated genomic tools, allows Miscanthus to both inform and benefit from … of rapidly growing plants whose biomass can be renewably converted into energy or biofuels. Although a member …
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Neha Varghese
… Neha’s key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic … through implementation of advanced analysis pipelines and tools as well as development and implementation of …
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JGI announces first round of 2023 New Investigator awardees
… The JGI is eager to work and share our tools with a widening circle of researchers. The JGI is eager to work and share our tools with a widening circle of researchers. That’s why … not led any previously-accepted proposals —  through the  New Investigator call under our Community Science Program.  …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… white paper focused on duckweed through the  CSP New Investigator call . It is the first project to have … to as natural products, the proposal includes plans to sequence several thousand Actinobacteria strains and then use computational tools to analyze biosynthetic gene clusters and then develop …
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Accelerating Metagenomics Discoveries with Deep Learning
… such as  Mash and  BBsketch , whose lead developer is JGI software developer Brian Bushnell, no alignment-free tool … Resources Division (CRD), in order to create more useful tools for the bioinformatics community. Other work presented … chromosomal sequences in mixed-genome samples) with a new tool called MetaGNN (Prashant Pandey of CRD). The …
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JGIota: Looking Back at Sequencing for Soybeans
… The soybean is a crop that could boost biofuels and fertilize fields. So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome sequence, researchers have been able to look into soybean’s …
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