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JGI@25: Following Fungi that Pry Apart Plant Polymers
… a chemical and biological engineer at the University of California Santa Barbara. So plants don’t break down without a … she opened her talk at the  2022 JGI Annual Meeting . In an herbivore’s poop sample, there’s a whole heap of microbes, … standards.  A year later, her team used proteomics, genomics and transcriptomics to discover another advantage …
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How To Use Our Systems
… Each portal lists a contact, or you can reach out via the form on our website.   … Looking for BBTools? Find it here.  …
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Help from Citrus’ Bitter, Hardier Cousin
… clues to disease-resistance that could prove fruitful for saving Citrus from greening disease. You’ve probably … and now disseminated around the globe, often as a rootstock for  Citrus , appeals in other ways. It better tolerates … the genome in order to find the genetic traits responsible for  P. trifoliata ’s hardiness, according to Zhanao Deng, …
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Single Cell Research Group
… material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic … focused on the application of  function-driven single-cell genomics . Here, single cells are characterized and selected …
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Micro-Scale Applications Group
… of single-cell genomes and directly link functional information with individual cells. Research Team    … the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes internal analytical … that allow us to select specific uncultivated microbes for sequencing based on their level of metabolic activity …
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CSP New Investigator Call
… The CSP New Investigator Call is for investigators and research initiatives new to the JGI. … pilot data to assess feasibility of a novel approach or form the foundation for a large-scale CSP proposal submission. Sequence requests … All proposals will be externally peer-reviewed for scientific merit, DOE mission relevance , proposed data …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our … submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared … Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated temperatures …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint … Area are also co-located in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department … is to serve our user community with large-scale advanced genomic capabilities. This year we brought online the latest …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms oil-producing alga into a powerful platform for developing ​​bio-based industrial products.    The … relationships than other algae, Auxenochlorella ’s reduced genomic complexity can accelerate the design-build-test …
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JGIota: Looking Back at Methane-Making Microbes
… We count on livestock for food and fiber, but raising these animals also produces … gas: methane. Those emissions mainly come from gut microbes — the bacteria and archaea breaking down plant …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … at Tel Aviv University in Israel, the National Center for Biotechnology Information, and the U.S. Department of … Finding the RNA virus snowflakes in the snowstorm of genomic data involved developing special computational …
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity … Lab), have taken stock of the current state of microbial genomic biodiversity. Using publicly available genome … the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We …
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