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Single Cell Research Group
… material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from … focused on the application of  function-driven single-cell genomics . Here, single cells are characterized and selected … Chris Rinke: Research Officer, Australian Centre for Ecogenomics Patrick Schwientek: Cofounder & CTO, Oralta … …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … Finding the RNA virus snowflakes in the snowstorm of genomic data involved developing special computational … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Micro-Scale Applications Group
… of single-cell genomes and directly link functional information with individual cells. Research Team    … The JGI … the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes internal analytical … various microscopy techniques … Stable isotope probing metagenomics: … Single cell: … For further details, please reach …
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A Grass Model to Help Improve Giant Miscanthus
… perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass  Miscanthus sinensis has been … The reference genome for  M. sinensis,  and the associated genomic tools, allows  Miscanthus to both inform and benefit …
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JGIota: Looking Back at Methane-Making Microbes
We count on livestock for food and fiber, but raising these animals also produces … gas: methane. Those emissions mainly come from gut microbes — the bacteria and archaea breaking down plant …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but … interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  Recently , researchers used population genomics to find that while archaeal hitchhikers may often …
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A Grass Model to Help Improve Giant Miscanthus
… perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been … The reference genome for M. sinensis, and the associated genomic tools, allows Miscanthus to both inform and benefit …
Learn more
Uncovering Novel Genomes from Earth’s Microbiomes
… leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications.   … and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the … with a host – with 23,000 MAGs. Modeling A New Path for Metagenomics Researchers Building upon these resources, KBase, a …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on a changing planet. Transcript for Audio Two special days occur in April: the 50th … close to our JGI hearts, we’re featuring some scintillating genomic science research that feels especially relevant to …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of … previous study conducted by our research team surveying the genomic and phenotypic diversity across the natural range of … more broadly allow us to assess how ploidy variation alters genomic diversity, fitness, and adaptability. Using a …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg and … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy … discovery, education, medicine, and economic development in genomic sciences to improve the human condition around the …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth … their expertise in developing and managing public viral genomics resources such as analytical tools and data … to help uncover the phylogenetic diversity of the human gut microbiome. By bringing their expertise in viral …
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