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Conservative taxonomy and quality assessment of giant virus genomes with GVClass
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Frederik Schulz
… Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His … of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs … al. 2022. Giant virus biology and diversity in the era of genome-resolved metagenomics. Nature Reviews Microbiology …
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JGI Early Career Researchers Featured in mSystems Special Issue
… Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more … While microbes regulate the planet’s biogeochemical cycles, viruses infecting microbes shape global ecological and … and viruses in the environment. Eloe-Fadrosh and Roux are part of the first cohort to receive Early Career Development …
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Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… a carbon fixation process known as the C4 pathway, which particularly helps plants thrive in warm, arid environments. … of plants have resulted in a paper published October 5, 2020 , in Nature Biotechnology . Kellogg and her colleagues, … Biotechnology and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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JGI on the 2021 Highly Cited Researchers List
… in, reported on over the last year: Jeremy Schmutz was part of a long-term multi-institutional research team that combined field data with a reference switchgrass genome to associate climate adaptations with switchgrass … colleagues used an extensive JGI database to investigate viruses detected in the samples. Simon Roux co-organized the …
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Making a Lichen Together
… of a lichen fungus and alga to understand their partnership more clearly. The Science The humble lichen is a … For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … Their partnership is widespread and cosmopolitan: more than 20,000 ascomycete species and hundreds of microalgae are …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms oil-producing … precise gene targeting in the genome in the November 2025 issue of The Plant Cell. Auxenochlorella is an … Overall, this work supports the mission of the Department of Energy (DOE) Biological and Environmental …
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University of California, Merced Internship Program
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IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses
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Genomics discovery of giant fungal viruses from subsurface oceanic crustal fluids
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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