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Science Programs
… approaches for and with users, and create computational tools and resources for them. Their concerted efforts help maximize the JGI’s impact in advancing …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early field studies related to her thesis on cone … positively, influenced the bioinformatics skillset I have today. I didn’t know anything about Principal Component …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… In honor of the JGI's 25th anniversary in 2022, we have … number of notable achievements that showcase our collaborations and capabilities to enable great science that will help … with the Stanford Human Genome Center evolved and continues today as a partnership with the HudsonAlpha Institute for …
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2024 Progress Report
… from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. … of primary users — 2,456 — had active proposals with us, along with more than 15,000 secondary users who made use of …
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Finding the Fermenters
… prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in environments with … from the  Hungate1000 project . They also used the tool to predict possible functions from 733 … metagenome-assembled rumen genomes. Finally, they used the tool to predict the fermentative end products of five …
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Partners
… science and serve as impact multipliers . The JGI has a long-term partnership with the HudsonAlpha Institute for Biotechnology for our Plant Program, … (NMDC)—to provide access to datasets, workflows, and tools to seamlessly expand data functionality. Close …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most relevant … Knowledgebase ( KBase ) integrates systems biology data and tools to help predict biological function.   To jointly …
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JGI Announces 2026 New Investigator Portfolio
… Gareth Gillard, Audrey Goeckner, Jennifer Goff, Sarah Gonzalez Henao, Yang Hai, Julia G. Harenčár, Sarah Hu; [Row … Elina Laanto, Rose A. Marks, Daniel Mok, Elise Morrison, Jake Nash, Reuben J. Peters, Morito Sakuma; [Bottom … Community Science Program , allows us to work and share our tools with a widening circle of researchers whose work …
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Complete genome sequence of the Medicago microsymbiont Ensifer (Sinorhizobium) medicae strain WSM419
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     Over the past billion years, fungi have spread quietly throughout our planet. … of Science User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent … The research efforts of the group have concentrated in demonstrating the power of data science in …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do anything, they must find a host, and not … score. The result is a genus-level host prediction tool that draws on the strengths of multiple virus-host …
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