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Host genotype and age shape the leaf and root microbiomes of a wild perennial plant
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Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species
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Specialized Plant Growth Chamber Designs to Study Complex Rhizosphere Interactions
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IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata.
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… help solve energy and environmental challenges.   Usually, plants have the upper hand against any kind of biomass … a chemical and biological engineer at the University of California Santa Barbara. So plants don’t break down without a … standards.  A year later, her team used proteomics, genomics and transcriptomics to discover another advantage …
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Functional Signatures of the Epiphytic Prokaryotic Microbiome of Agaves and Cacti
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Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization
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The Big Deal About Short Plants
Despite their diminutive stature, “short plants” such as mosses could be uniquely powerful in helping scientists link plant genetic sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected hurdle: ginormous sex …
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Jeremy Schmutz
Genome Institute dates back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha … For the past 13 years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community … gene atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom. …
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FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus
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JGI Mural
The JGI mural on the 3rd floor of the Integrative Genomics Building whimsically references dozens of iconic … to advancing the frontiers of environmental and energy genomics. Click on the images below to learn about the … science depicted. The two-story JGI mural was commissioned for the JGI’s 25th anniversary and done by Berkeley-based …
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How Microbes Can Protect Plants in Drier Straits
A mini-episode looking at the efforts of Pankaj Trivedi, whose New Investigator proposal was … approved through the JGI Community Science Program, to use microbiome science to help make plants more resilient to drought. …
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