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JGI@25: Strengthening Soybean
… pair with maize, the dominant source of bioethanol, in crop rotation, but soybean ( Glycine max ) also has the advantage … and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has … source of both protein and oil was also the largest plant project completed by the JGI. It has since been cited more …
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Data Ecosystem
To expand access to integrated data, improve tools and infrastructure as well as … tools specifically optimized for high-performance computing environments. … KBase is a critical partner in … analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to …
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Building Sphagnum Genomic Resources
… soil carbon. In high latitudes, sphagnum can also act as a protective layer insulating permafrost from the warming … (Spruce and Peatland Responses Under Changing Environments) project, assessing how northern peatland ecosystems respond … researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different …
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FICUS Overview
The Facilities Integrating Collaborations for User Science (FICUS) … and multidisciplinary nature of DOE mission science projects, this initiative aims to encourage innovative … by the reviewers. The ranked proposal list, along with a recommendation from management at JGI and the other …
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Fungus Fuels Tree Growth
… caused poplar cuttings to grow about 30 percent larger by dry weight than without PM193  . By contrast, using a … partnered with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … that directly influence plant phenotype, such as secreted proteins. However,  M. elongata  seems to encourage the plant …
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support … on computational and experimental approaches to study genome regulation in human and other vertebrate genomes. When he joined the JGI, he worked as a project scientist and then as a research scientist on …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Congratulations to Jane Grimwood, who has been appointed the Loretta Purdy Spencer Chair in Genomics at the … City. Grimwood is also co-director of the HudsonAlpha Genome Sequencing Center. Grimwood heads the Library … after the JGI was established to work on the Human Genome Project in 1997. She was a group lead at Stanford Human …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities …
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Exploring the loblolly pine (Pinus taeda L.) genome by BAC sequencing and Cot analysis
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Igor Grigoriev
Dr. Grigoriev joined the DOE Joint Genome Institute in 2003, following his postdoctoral … of California, Berkeley. He contributed to the Human Genome Project and led annotation and analysis of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the JGI Fungal …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… s ditched their flagella and other traits when migrating back to the ocean. The Science Scientists have … structures that enable organisms to swim around. However, genome and metagenomic sequencing conducted by the U.S. … was done under Contract DE-AC52-07NA2734. Funding for this project was provided by the U.S. National Science Foundation …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal … data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact …
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