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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do anything, they must find a host, and not just any host will do. … the roles viruses and their host microbes play in nutrient cycles. …
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Fishing for Novel Cellulose Degraders
… A “bait and hook” single-cell genomic approach to bioprospecting. The Science One of the most vital pieces of equipment … known to be key contributors to the planet’s biogeochemical cycles, but the vast majority remains uncultivated and … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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Three Join the JGI User Executive Committee
… of the University of California, Santa Barbara. They join eight other JGI users already serving on the UEC – go here to view the full roster of members. … He’s interested in how microbes influence biogeochemical cycles in soils and sediments and plant-microbial …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. The Science Haloarchaea flourish in hypersaline environments, and researchers are interested … microbial communities contribute to global biogeochemical cycles, and possibly cold-temperature enzymes for …
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes … The Science A team led by researchers at the Max Planck Institute (MPI) for Marine Microbiology has developed, … of microbes that play key roles in global biogeochemical cycles remains unexplored and uncultivated. Developing a …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … viruses impact many ecological processes, including carbon cycles. “Whether or not you planned it, viruses are most …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… Innovative technology from this biomanufacturing collaboration is available for licensing. The Science In  Nature Communications , researchers … The work conducted by the U.S. Department of Energy (DOE) Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, 24 … marine food web base, they also feature in many nutrient cycles. Thus, having reference  Chaetoceros genomes would … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Taking Stock of the Known and Unknown Microbial Space
… diversity hotspots Over the past few decades, advancements in sequencing technologies have led to an abundance of microbial … the world, playing key roles in regulating global nutrient cycles. The information gained from understanding the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements metagenomics studies. The Science Researchers demonstrated the value of conducting large-scale single cell genomics by collecting nearly … Impact Though microbes help regulate the planet’s nutrient cycles and are potentially of use in fields ranging from …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational tools to … B.S. in Microbiology, Université Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter scenes that came … whose presence or absence can impact the planet’s nutrient cycles. While most organism’s genetic information is encoded …
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