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Jeremy Schmutz
Institute and the collaborative projects funded through the CSP program. In addition to continuing to develop strategies … improvement. Nature Genetics 52: 525-533. Lovell, JT et al. 2018. The genomic landscape of molecular responses to … World’s Most Influential Scientific Minds 2014-2018 (Plant & Animal Science) Clarivate Analytics Highly …
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From Competition to Cooperation
… the framework of the Mycorrhizal Genomics Initiative (CSP # 305), Metatranscriptomics of Forest Soil Ecosystems project (CSP # 570) and the 1000 Fungal Genome projects (CSP # 662 & 1974). This research was also supported by the …
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How to Target a Microbial Needle within a Community Haystack
… strides in generating genome sequences for members of the microbial world through bulk community sequencing … of HCR-FISH+FACS for selectively enriching low abundance microbial groups from complex natural communities. This type …
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Frederik Schulz
… user community and supports various user projects in the Microbial Program. In an LDRD-funded project, Dr. Schulz … binning of a giant virus. mSystems. 5 (3) Schulz et al. (2018) Hidden diversity of soil giant viruses. Nature Communications. 9 (1), 1-9 Roux et al. (2018) Minimum Information about an Uncultivated Virus Genome …
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Fungal & Algal Program
Program aims to streamline genome analysis workflows for microbial eukaryotes, build fungal and algal pangenomes, and … The program also explores microeukaryotic members of microbial communities, cataloging gene markers, and …
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JGI@25: Using Team Science to Build Communities Around Data
… of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would complement these … The Open Green Genomes Initiative is the product of a 2018 Community Science Program proposal from James …
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Virus-Microbe Interactions of Mud Island Mangroves
… worked with the JGI through a Community Science Program (CSP) proposal, and Rambo’s research builds on that. “The purpose of this CSP is to better understand methane cycling in mangrove … Rambo’s work was overseen by Susannah Tringe, head of the Microbial Systems group. He also worked with Simon Roux and …
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Adam Reisselman on being a 2016 DOE Computational Science Graduate Fellow
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Fungal Friends or Foes in Plant Roots
… determine if these fungi act as friends or foes. The Impact Microbial communities comprised of fungi and bacteria can … work was partly enabled by a JGI Community Science Program (CSP) proposal led by INRAE’s Francis Martin that contributed … Contract No. DE-AC02-05CH11231 within the framework of CSP 1974 “1KFG: Deep-sequencing of ecologically relevant …
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JGI Scientists Pen Genome Watch Articles
… the  Nature   Reviews column all started with an email in 2018.  Tanja Woyke , who leads the  Microbial Program at the JGI, received a message from Andrea … with Du Toit as their editor. The partnership has proven so successful this year, JGI is providing another three Genome …
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JGI@25: Strengthening Soybean
… with gasoline. Yet.  In 2010, soybean became the first legume species with a published complete draft genome …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and …
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