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Raman-based sorting of microbial cells to link functions to their genes
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Sorting for secreted molecule production using a biosensor-in-microdroplet approach
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JGI@25: Following Fungi that Pry Apart Plant Polymers
Over the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and … fungi also, unexpectedly, secrete natural products . Those results showed that these fungi may be able to provide tools … production.    Over time, as these projects have delivered results, they have also snowballed into more collaborations. …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … especially relevant to living on a changing planet. In this short audio production, we’ll hear from Karolina Heyduk, an … can up-regulate that CAM. There are all sorts of other intermediate phenotypes where plants are using a little bit of …
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … Their analysis identified fungal gene families that help determine if these fungi act as friends or foes. The Impact … degrade plant cell walls and break down plant sugars. The results also revealed that the most beneficial fungi in root …
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach to better understand … diversity is definitely holding a lot of new secrets in terms of functional diversity as well.”  Researchers from …
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Finding the Fermenters
… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … process called fermentation. To better understand the range of bacteria and archaea that rely on this form of … along with 4,355 genomes and 13.6 million genes. The results reveal that fermentative metabolism is seen in a …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the “chytrids”).  A collaborative team … in the non-flagellated terrestrial fungi were extremely short, suggesting that there were a series of rapid …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
Internship Program was brimming with excitement and determination as they came onsite. From data carpentry to … valuable to their careers going forward. Watch this short video (below) to hear more about the summer from their … Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth …
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … who don’t engage in the lichen lifestyle. The team’s results appear in  BMC Genomics . To explore the genomes, … (for the fungus genome) to aid analysis. Many of the results were unexpected. For example, lichenologists …
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Mieux connaître les virus présents sur Terre grâce aux métagénomes
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The Case for Conservation
… yields.  The Science The fire moss Ceratodon purpureus is a short plant with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single set of chromosomes, are available. The genome assemblies …
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