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His responsibilities include the development of novel computational tools to identify virus sequences, the design …

… sends Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your …

… head Nikos Kyrpides , Biology & Biochemistry category Computational Genomics Lead Dan Rokhsar, Molecular Biology & … for an uncultivated virus genome, including the source, methods of identification of the virus genome, and data …

… sequenced community genomes and expressed gene transcripts (metagenomes, metatranscriptomes), as well as the genomes of … Lab), through the JGI Community Science Program . The metagenomes were also processed using the JGI-developed … Genomes & Microbiomes (IMG/M) system . By analyzing the metagenomes, metatranscriptomes and single cell genomes, …

… carried out postdoctoral work at LBNL, where he worked on computational and experimental approaches to study genome … and plasticity in bacterial gene regulation. Nature methods 18 (12), 1499-1505 Shulse et al. 2019. Engineered …

… developing new high-resolution and high-throughput methods to link uncultivated viruses to their host. With these new methods, she hopes to expand our understanding of the roles …

… several thousand Actinobacteria strains and then use computational tools to analyze biosynthetic gene clusters … for the control of plant pathogens, partnering with 600 instructors worldwide who work with more than 10,000 … The JGI provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific …

… genomes. “These genomes are so special, regular search methods don’t work,” said Roux. “The machine learning … microbial genomes and 2,249 of the 6,412 (35 percent) metagenomes mined for this study. “We’re simply getting much … The JGI provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific …