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… freshwater ecosystem works. When she set out to analyze 500 metagenomes from this sample set through the Community … have been filtered out as noise using more traditional methods. Thus far 25 terabases of metagenome data have been … The JGI provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific …

… His responsibilities include the development of novel computational tools to identify virus sequences, the design …

… and analysis support for user science, with a focus on metagenomes. Passionate about automation and collaboration, …

… carried out postdoctoral work at LBNL, where he worked on computational and experimental approaches to study genome … and plasticity in bacterial gene regulation. Nature methods 18 (12), 1499-1505 Shulse et al. 2019. Engineered …

… Despite advances in sequencing technologies and computational methods in the past decade, researchers have uncovered … to inform future analyses,” said José P. Faria, a KBase computational biologist at Argonne National Laboratory. “The … The JGI provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific …

… and exit of host cells. Leveraging culture-independent methods, researchers have shed light on the genetic makeup … viruses in metagenomic reads. Another approach, single cell methods — involving flow cytometry and sequencing of single … reference genome, to sift for snippets of giant viruses in metagenomes. This has been useful in marine environments, …

… genomes. “These genomes are so special, regular search methods don’t work,” said Roux. “The machine learning … microbial genomes and 2,249 of the 6,412 (35 percent) metagenomes mined for this study. “We’re simply getting much … applications, but we are limited in our predictive methods to discover new anti-CRISPRs,” said Adair Borges, a …

… the end of last year. Dan: So these are going to be seaweed metagenomes? You’re sequencing everything? Brad: Metagenomes and genomes. We’re really hoping to – we’re …