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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, … enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have contributed toward …
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Natural Prodcast Episode 9: Roger Linington
… … DAN: Welcome back for episode 9 of Natural Prodcast. This … in a classical natural products program because they are selected against because of their lack of function. So …
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Cultivating Symbiotic Antarctic Microbes
Nanohaloarchaeota cultures reveal they are symbionts and not … are symbionts, rather than free-living organisms as had been originally thought. The Impact The Antarctic … to that of a free-living organism. First discovered in 2011, Nanohaloarchaea are part of the DPANN (Diapherotrites, …
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Mission
JGI Mission As a U.S. Department of Energy Office of Science user … ALL PROPOSALS must support the DOE/BER Mission Areas we serve, see below.  … The U.S. Department of Energy … the completion of DOE’s commitment to the Human Genome Project , the University of California, which manages …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected as the 2025 recipient of the Microbiome Data Prize …
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Abiotic selection of microbial genome size in the global ocean
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Nikos Kyrpides
Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the … (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes Program … Ecology Research and Analysis ( CAMERA ). … Education … Selected Publications … Awards and Service …
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Forming Scientific Connections and Building Community
… pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome … say about their experiences and what they’ll take with them as they go forward in their careers.   Listed below are the … ” Erika Maquiling, Leonel Gonzalez and Peter Nguyen were selected to give presentations of their work at the recent …
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From Competition to Cooperation
Tracking evolution of symbiotic lifestyles across multiple … developed symbiotic relationships, and how the mutualistic associations allow host plants, such as candidate  bioenergy … the framework of the Mycorrhizal Genomics Initiative (CSP # 305), Metatranscriptomics of Forest Soil Ecosystems …
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Graduate Students Get Thesis Research Opportunity at the JGI
Twice a year, the DOE Office of Science Graduate Student Research … the DOE national laboratories or national user facilities. As a result of the latest call , a total of 70 graduate students from 52 universities were selected to carry out part of their thesis research at 12 …
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Insights into the Effects of Long-Term Artificial Selection on Seed Size in Maize
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Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations
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