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Programs & Platform Leads
User Facility, the JGI plays a leadership role in enabling the frontiers of research related to DOE’s missions in bioenergy, carbon cycling and biogeochemistry. In complement …
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Comparative genomics reveals insights into characterization and distribution of quorum sensing-related genes in Shewanella algae from marine environment and clinical sources
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High‐throughput identification of novel heat tolerance genes via genome‐wide pooled mutant screens in the model green alga Chlamydomonas reinhardtii
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Plant Program
With collaborative user projects, the JGI’s Plant Program delves into the natural … challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and …
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An Integrated Dataset to Understand Ecosystem Interaction
… tree and soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. The … (LANL), and DE-AC05-76RL01830 (PNNL). … BioScales project on JGI Genomes Online Database … BioScales project …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a … anything. The collaborative consortium behind the GROWdb project demonstrates not only how researchers can …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” to identify data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact …
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Petra Byl
Petra is an affiliate researcher who cultivates marine algae infected by giant viruses from subtropical, oligotrophic ocean gyres. She uses genomic and transcriptomic sequencing along with laboratory manipulations to understand how nutrient …
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David Goodstein
With a background in experimental and computational surface physics, Dr. Goodstein held positions at … in support of JGI’s contributions to the Human Genome Project, he began developing larger comparative genomic …
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Frequently Asked Questions: Proposal Submission
See below for a list of Frequently Asked Questions about our proposal submission process. You can review … ; click on the call link to see specific details including project types supported, sample/capacity limits, and …
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Pinning Down a Piece of Photosynthesis
By studying the structure and function of a cyanobacterial … products of photosynthesis are easy to point out. Plants, algae and cyanobacteria create the air we breathe and the … — but the experts we were able to work with on this project to ask questions about structure and function,” …
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Effects of Polar Light Cycle on Microbial Food Web
Populations of Antarctic lake microbial communities change with the seasons. The Science … Preliminary observations regarding the contributions of algae and viruses to the ecosystem were noted, but require … (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US Department of …
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