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Mining Metagenomes for Cas Proteins
… JGI’s IMG/M database and biochemically characterized at UC Berkeley and the Innovative Genomics Institute.  The … of Cas proteins, named Cas14. Using these sequences as a starting point, JGI data scientist David Paez-Espino in … the IMG/M system with its large collection of publicly accessible metagenomic datasets from a wide variety of …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… processes. The Science In a recent Microbiome paper , scientists focused on the conifer needle microbiome. The … focused on root-associated microbiomes. Scientists conducted a shotgun metagenomic survey on three types of … across six sites spanning a 1000km section of the Rocky Mountains. This represents the first study of this …
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Len Pennacchio
… at Lawrence Berkeley Laboratory, and Adjunct Professor at UC Berkeley. Dr. Pennacchio received his Ph.D in 1998 from … NLM Board of Regents Working Group on “NIH Comparative Genomics Resource” 2021-  Co-Chair, “Advances in Genome … Exceptional Scientific Achievement 2017-  Adjunct Professor UC-Berkeley 2015-  Co-Chair, “Advances in Genome Biology & …
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CSP Large Scale Call
… whose LOIs/proposals are approved will receive further instructions via email.   Human or animal disease-related work …
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Salt tolerance of two perennial grass Brachypodium sylvaticum accessions
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Changes to virus taxonomy, the international code of virus classification and nomenclature, and the ICTV statutes ratified by the International Committee on Taxonomy of Viruses (2025)
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Meeting report: International soil virus conference 2024
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Dan Rokhsar
… 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards … annotation, and analysis of three human chromosomes. After successful completion of the Human Genome Project, Professor … animal genomes. He currently leads the JGI’s Computational Genomics group, and is past lead of the Eukaryotic Genome …
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Mapping the Earth’s Hidden Fungal Kingdom
… of nearly 2,000 of these genomes reveals just how much we still have to discover about Earth's fungal kingdom. … JGI’s online fungal genomics resource platform, reveals a stark imbalance. More recently evolved fungi within Dikarya, … crucial but uncharacterized functions. The challenge facing scientists is both logistical and analytical. How can the …
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1001 Proteomes: a functional proteomics portal for the analysis of Arabidopsis thaliana accessions
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Persistent memory as an effective alternative to random access memory in metagenome assembly
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven …
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