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Filling in the Plant Tree of Life
… What if we understood plants and how they adapt to their ever-changing … food, medicine, and bioenergy crops. But most available genomes are from narrow swaths of the plant tree of life. …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and … regulation determines when and where genes are activated to sustain life’s processes.  Traditionally, mapping this … and the sheer complexity of plant genomes. Now, with improvements to DNA Affinity Purification Sequencing …
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Driving through stop signs: predicting stop codon reassignment improves functional annotation of bacteriophages
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Incorporating Genomics and Bioinformatics across the Life Sciences Curriculum
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An Improved Method of RNA Isolation from Loblolly Pine (P. taeda L.) and Other Conifer Species
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to … an efficient switchgrass transformation pipeline and, in collaboration with industrial partners, generated hundreds … Brachypodium distachyon is a small annual grass that is well …
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Population Level Analysis of Evolved Mutations Underlying Improvements in Plant Hemicellulose and Cellulose Fermentation by Clostridium phytofermentans
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers have developed … model species like P. hallii , researchers can develop crop improvement techniques that could be applied to switchgrass. … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of …
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Intraspecific comparison and annotation of two complete mitochondrial genome sequences from the plant pathogenic fungus Mycosphaerella graminicola
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Improved Gene Annotation of the Fungal Wheat Pathogen Zymoseptoria tritici Based on Combined Iso-Seq and RNA-Seq Evidence.
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of … sorghum varieties, a resource for breeders and researchers to harness the traits that let this biomass powerhouse … Center.  This work is the result of an international collaboration, beginning with the work of the late Todd …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI. … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and … 1) Complete Sample Metadata form Sample metadata is collected via …
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