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Who We Are
… biotechnology through analyzing and harnessing genomic information from plants, fungi, algae, non-medical microbes, microbial communities, and other relevant organisms. We provide access … in doing so enabled the JGI to be the first to publish the sequence analysis of the target chromosomes 5, 16, and 19, …
Learn more
Viral Genomics Group
… parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and … especially metatranscriptomics, to better highlight and ultimately predict the main viral impacts in these microbiomes. … invaluable information on virus diversity and activity in microbial communities, however they can only provide a …
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Natural Prodcast Episode 18: A CSP Primer
… the user programs at the JGI, and I’m also the head of the microbial genome program. And I’m a scientist here. And have … at JGI start with sequencing, but where else did those sequences go? Like, what are the other scientific tools we … that describe the work. In general. Scientific merit and why it’s important. The DOE mission is one of these …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … for us– what organisms people use for genome mining, why it’s called genome mining, how the biosynthetic gene … of the IMG data portal , which is a larger portal for microbial genomics. IMG stands for Integrated Microbial …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… applied to samples collected from acidic iron-oxide microbial mats in Yellowstone National Park over time, researchers … thousands to millions of copies of a particular DNA sequence from just a few pieces of DNA. Summary The extreme … Computing System, operated and supported by MSU’s Information Technology Center. …
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Natural Prodcast Episode 22: Alison Narayan
… enzymes are, right? ALISON NARAYAN: Yes, and so that’s why I don’t like that sentence. I think that sometimes, we … association that might help? Like, if you have an unknown sequence or new flavin monooxygenases, you could say, oh … studying since day one in my lab that do oxidative dearomatization chemistry on arenes. The other reason that …
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Natural Prodcast Episode 23: Aaron Puri
… of their synthases so that we can start to use the DNA sequence to predict or just understand better the language of microbial cell-cell communication. And he told us about his … your interest in getting into natural products. DAN: Why are you here at SIMB? AARON PURI: Yeah. Thanks Jackie. …
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Natural Prodcast Episode 1: The Primer, Part 1
… stories about natural products, so you can get a feel for why I think they’re so important, and we’ll start to explain … we want to do this. And also to provide a little more information and context for people who might possibly be … right. So I did a PhD in microbiology at MIT, and I studied microbial ecology. I studied Vibrio species in the ocean, so …
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Industry Engagement Program
… by using advanced computer analysis coupled with liquid chromatography mass spectrometry. We offer accessible, AI-ready large-scale data repositories for genome information with analysis tools for mining and prediction The JGI … our User Program’s Community Science Program, the JGI sequenced and characterized 270 genomes of the Clostridium …
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How to Submit Sequencing Samples
… for many projects at the JGI. The quality of the starting material is one of the greatest predictors of a successful … submission of all project metadata for all project materials.  PI will receive a shipping approval email with … to the user. PLEASE NOTE: The JGI will not accept any materials classified above NIH Biosafety Level 2. 3) Review …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of … National Laboratory, used single-cell sequencing to sequence both a cell’s genome and detect accompanying viral …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… least, talk to us, first about my definitions of things and why I am wrong, and also talk about some of the great … features of the compound. For example, lipids– doesn’t matter if it has one extra carbon or two or one less, at the … to approach it is more related to what JGI does, which is sequence genomes. And we just published last year in the …
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