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… the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and tracking … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been …

… group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also … link functional information with individual cells. Research Team    … uniquely offers the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes internal …

… about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, secondary … biological perspective, like what was this bacterium, and why did your group want to study it? Marnix Medema: You mean … just been looking at like 16S taxonomic profiles of these communities looking at who is in there, but never like what …

… Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today we’re going to talk to Kate Duncan. And Kate is– I should ask, you … Duncan: Yeah. I love actinomycetes. Dan Udwary: Tell us why. I mean, I know, but I think– Alison Takemura: I want to … of almost finished characterizing them. We’ve got genome sequences, which are just incredible. We’ve looked at the …

… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial … better understand the plant-associated terrestrial world. Research Team    … Plant microbiomes hold the amazing ability to influence plant development, fitness and …

… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … for us– what organisms people use for genome mining, why it’s called genome mining, how the biosynthetic gene …

… The JGI is leveraging its current partnerships to offer new capabilities and … following ways: Data integration is critical to exploring research questions in a comprehensive, multi-disciplinary way. … users together through our systems, we build far-reaching communities of researchers to bring down barriers to …

…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at … Berkeley National Laboratory. The JGI consists of 225 researchers and support staff in the Integrative Genomics … from plants, fungi, algae, non-medical microbes, microbial communities, and other relevant organisms. We provide access …

… is like, what’s your origin story in natural products? Why are you doing this? JACLYN WINTER: I’ll kind of go back … have an E. coli strain that we’ve been working on that we sequenced the genome. And it has 17 resistant genes on a … genome right now. But eventually, it will be– it could be a viral sequence. It could be a contig. It could be whatever …

… to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the … carbon cycling, biodegradation and biogeochemistry. This research helps translate their genomic potential into …

… Hey Marcy!  ALISON: Hey Marcy?  MARCY: Hello. How’s it going?  DAN: Good. How are you?  MARCY: Am fine. I live in a … does some really exciting work there. And I thought, well, why don’t we try to go to Alaska and see what we can find … with any kind of gene cluster identification, doing it with sequence alone you have to have some kind of a template to …

… of Natural Prodcast. This week, Alison and I talk to Roger Linington, from Simon Fraser University in British Columbia, … Apple Podcasts or wherever you’re getting this and tell me why you’re listening. DAN: But, now, here’s Natural Prodcast … And that’s been followed by developments in pulse sequences and improvements in the ways in which you acquire …