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… welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell you about in this introduction. … And at the time, it was really exciting when people would sequence [DNA]. The genome was– well, that hadn’t really … polyketide synthase and then P3. We still don’t know why 20 years later. JACKIE WINTER: It’s pretty amazing, …

JGI Mission As a U.S. Department of Energy Office of Science user facility supported by the … in doing so enabled the JGI to be the first to publish the sequence analysis of the target chromosomes 5, 16, and 19, … and fungal metabolism necessary to design communities, new strains, or enzymes to convert plant biomass components into …

Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is …

Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is …

The Joint Genome Institute's DNA Synthesis Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is done by … automations for DNA design, assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables …

… least, talk to us, first about my definitions of things and why I am wrong, and also talk about some of the great … is what. This is not new. It actually was first proposed by two authors called Firn and Jones. I’m sure that people … to approach it is more related to what JGI does, which is sequence genomes. And we just published last year in the …

The mission of the Joint Genome Institute is to serve the scientific … discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE Systems … … For sequencing projects, once work is under way, raw sequence data is released to NCBI’s Sequence Read Archive on …

… intriguing. The squid – the Hawaiian bobtail squid has two organs that solely house– whose sole function is to … does some really exciting work there. And I thought, well, why don’t we try to go to Alaska and see what we can find … with any kind of gene cluster identification, doing it with sequence alone you have to have some kind of a template to …

Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … the submitting researcher, and by LBNL. The Uniform Biological Material Transfer Agreement (UBMTA) and UBMTA …

… more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … for us– what organisms people use for genome mining, why it’s called genome mining, how the biosynthetic gene … lots of stuff. On average, we had something– I think we had two biosynthetic clusters per MAG, which is pretty good …

… culture-disconnected. Like we’ll take some soil samples and sequence all the bugs out of that or whatever. And so I was … resources, but they don’t necessarily have the support network, the equipment, the facilities to really apply the … methicillin-resistant Staphylococcus aureus . Can you share why finding treatments for these microbes is so important? …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … sequencing projects, including 10,000 Actinomycetota strains and 10,000 type strains. These efforts will provide … resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from …