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… there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And I think … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger … take to improve on the data side of things and sequencing analysis side of things to really start to be able to …

… As a National User Facility, the JGI serves more than 2,500 users … joined the JGI in 2017, he brought with him 20 years of industry experience — and an opportunity to expand the … and environmental samples by using advanced computer analysis coupled with liquid chromatography mass …

… Research in the Eloe-Fadrosh group focuses on using genome-resolved … develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct … Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which is of …

… The mission of the Joint Genome Institute is to serve the scientific … relevant bioenergy and environmental problems.  The mission of the National Energy Research Scientific Computing Center … Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) …

…   The JGI’s Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … advantages to the organisms producing them, and are often involved in defense, nutrient acquisition and … biosynthetic gene clusters (BGCs), advancing pathway analysis, optimization of cell- and cell free-based …

… about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, secondary … biological perspective, like what was this bacterium, and why did your group want to study it? Marnix Medema: You mean … different types of data, including expression data, use of metatranscriptomics, where you measure gene expression …

… Eukaryotic projects: Kerrie Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del Rio , Danielle Graham , or Miranda … You can visit the Products & Offerings section of our website for … The majority of JGI projects come from the user community. Find out about …

… more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … for us– what organisms people use for genome mining, why it’s called genome mining, how the biosynthetic gene … would have really done a somewhat exhaustive chemical analysis of a bacterium that they’re interested in, usually …

… Below is a brief description of the process needed to prepare and ship samples for sequencing by the … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … samples to the JGI. PI sends Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need …

… then genomics happened. Dan: Yeah, I did my first genome sequence with you. Brad: That’s right,  Dan: JGI did it in … working with you, Dan, on this one, and we said, “Well, why don’t we have you know, the bioinformaticians go against … Pacific Ocean, or in the bay, and be able to do chemical analysis, as well as transcript analysis. And what we’re …

… Microbes drive critical ecosystem functions and affect global nutrient cycling, however they do … group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … involves both experimental and computational exploration of uncultivated viral diversity, characterization of …

… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a … least, talk to us, first about my definitions of things and why I am wrong, and also talk about some of the great … to approach it is more related to what JGI does, which is sequence genomes. And we just published last year in the …